Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1431
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   8.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 223 SGRYSVLWTFIHFICWKQQLW 285
           +G  +V+W   +F  WK   W
Sbjct: 210 AGTLAVVWIMCYFCIWKGVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 223 SGRYSVLWTFIHFICWKQQLW 285
           +G  +V+W   +F  WK   W
Sbjct: 263 AGTLAVVWIMCYFCIWKGVKW 283


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 182  LNLWEEKGCPTNKLVV 229
            LN W + GCP    VV
Sbjct: 1481 LNAWSDGGCPMIYFVV 1496


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 245  GRSFTLSAGNNNYGLG 292
            G+   L++GN N G+G
Sbjct: 1202 GKPIVLASGNKNVGVG 1217


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 20  EGYHVPELCQELDAIHVMSYD 82
           E   + ELC+  +  H++SYD
Sbjct: 263 ENEDLEELCRGCNLGHMISYD 283


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 79  IRHHVDSVQFLTQLWYMISLHQPE 8
           +R  +DS   +T     +SL+QP+
Sbjct: 350 LRDAIDSGNVITPQGVFLSLYQPQ 373


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 251 NVHRTEYRPLVYW*GNPS 198
           N+  T Y  +VY+ G PS
Sbjct: 288 NIEGTHYVKIVYYLGIPS 305


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 251 NVHRTEYRPLVYW*GNPS 198
           N+  T Y  +VY+ G PS
Sbjct: 303 NIEGTHYVKIVYYLGIPS 320


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 182  LNLWEEKGCP 211
            L++W + GCP
Sbjct: 1519 LHVWPDNGCP 1528


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 182  LNLWEEKGCP 211
            L++W + GCP
Sbjct: 1515 LHVWPDNGCP 1524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,338
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)