Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1428
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.6  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    25   8.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 347 NRPSPG**TQ*D*TDV*TSASENQVSLGSKSARSSSVIWEIS*RTQDGTKIS 192
           N P PG  T    ++V ++ SEN    GSKS  SSS++   +  T   T I+
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPIT 100


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 283 KTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRR 155
           ++K     K +  P+S  +SH E K+A K   +++  K  ++R
Sbjct: 594 ESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKR 636


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 286  LKTKFPSAQKAQ--GAPQSSGKSHDEPKTAPKSAAEREIGKRTT 161
            L+ K  +A++ Q    P++  K H EPK+A    AE   G   +
Sbjct: 1408 LRAKLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAELTNGSNAS 1451


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +1

Query: 208 SWVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYCVYYP-GEGRLFSHLLSSSA*RR 384
           S V   IS   EEL     P + W +      +V +Y  Y+P G  ++  H   S     
Sbjct: 64  SGVESPISVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKH---SGV--- 117

Query: 385 NESGPPKRHHD-VIWSEILK 441
           + + P  +HHD V   E+LK
Sbjct: 118 DATKPYLKHHDWVNEEELLK 137


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 59   IMFKNALQLPRIDN*VFSVTSMNKFKYTAILLSTSRPLADFSLCR 193
            +++  AL++P  D+ V   TS+   K+T  L +TS  +  FS+ R
Sbjct: 2117 LLYYLALEIPNEDSSVLGWTSLKVSKHTDPLRATSDFIPLFSMQR 2161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,922
Number of Sequences: 5004
Number of extensions: 61480
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)