Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1428
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228...    31   0.68 
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215     31   0.90 
03_06_0316 + 33091194-33091370,33091451-33092155                       29   2.7  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    29   2.7  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   3.6  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    28   6.3  
05_03_0035 - 7592177-7592938                                           28   8.4  

>05_05_0297 -
           23921648-23921758,23922011-23922089,23922774-23922822,
           23923180-23923255,23923693-23923767,23923862-23923992,
           23924830-23924935
          Length = 208

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 334 PDNKRSKIEQMFELQHLKTKFPS-AQKAQGAPQSSGKSHDEPKTAPKSAAEREIGK 170
           P  ++SK E   +LQ  ++  PS AQ+A G P+   K     +  P + A REI K
Sbjct: 7   PAVRKSKAEPKKKLQFERSPRPSKAQRAGGTPRQQTKQRKPHRFRPGTVALREIRK 62


>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
          Length = 257

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 349 IIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 188
           I   LP    ++I+ ++   HLK +  +  +      S GK H +PK+A K AA
Sbjct: 92  IAARLPGRTDNEIKNVWHT-HLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAA 144


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 340 LLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTA--PKSAAE 185
           L+   K +K++  ++L    T+ P+A K +  P ++ K   +PK A  PK+AA+
Sbjct: 106 LVAAGKLTKVKNSYKLP--PTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAK 157


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -2

Query: 487 EVWKNKTLLKGSRVIISEFLTKSRHDVFLEA--RSHFGVKRCWTTDGKIIVLLPDNKRSK 314
           E+WKN    K  +     F    RHD  L +      G  +  T+D   +V   +  +S 
Sbjct: 364 ELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSS 423

Query: 313 IEQMFELQH 287
           +E+  EL H
Sbjct: 424 LEKAAELLH 432


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 292 QHLKTKFPSA---QKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRRK 152
           +H KTK  S    +K++ + +SS    D  KT   S+     G+RTTR K
Sbjct: 237 KHKKTKRKSRGTKRKSKRSYRSSSDDSDSSKTGGSSSDSESEGRRTTRTK 286


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 264 AEGNLVFRC*SSNICSILLRLLSGRRTIIFPSVVQQ 371
           A+GNL  +C   +   +LL ++SG+R    P+ +++
Sbjct: 699 AQGNLTLKCDVYSFGVVLLEIISGKRNRTLPTFLRE 734


>05_03_0035 - 7592177-7592938
          Length = 253

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 283 KTKFPSAQKAQGAPQ--SSGKSHDEPKTAPKSAAERE 179
           KT+  S  KA+  P+  S  KS  EP++ P++ AER+
Sbjct: 194 KTEPKSESKAEPKPERKSYSKSKPEPESKPEAKAERQ 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,075,478
Number of Sequences: 37544
Number of extensions: 401749
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)