Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1428
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 2.5
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 2.5
U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna syn... 29 3.3
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 29 3.3
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 27 9.9
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 27 9.9
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 27 9.9
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 27 9.9
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 27 9.9
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 27 9.9
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 27 9.9
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 27 9.9
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 472 KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 296
KT++ S + + EFL + R L+ + ++ C I +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350
Query: 295 LQHLKTKFPSAQK 257
LQ +K + A +
Sbjct: 1351 LQRVKQRTEEANR 1363
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 472 KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 296
KT++ S + + EFL + R L+ + ++ C I +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350
Query: 295 LQHLKTKFPSAQK 257
LQ +K + A +
Sbjct: 1351 LQRVKQRTEEANR 1363
>U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform b protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 325 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 161
K+ I+++ L+ L K + Q+ A A QS K ++PK PK +++ GK+ T
Sbjct: 32 KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 325 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 161
K+ I+++ L+ L K + Q+ A A QS K ++PK PK +++ GK+ T
Sbjct: 32 KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 661 IPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 551
+P + D A + IL ++ + TEE+L A YRL
Sbjct: 769 VPREELIDLARELFAILLDEWATSFVTEEELEALYRL 805
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 541 TNKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 410
T KPR + V+ +++R NE+W+N L + V +++ L+ D
Sbjct: 266 TQKPR-LTVKQQAIKRENELWENNRLHRSGVVAMADELSSIFED 308
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 282 KPSFPRLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMAVYL 133
+PSFP R+ + H G +P++ Q Q+Q S+R E SM+ L
Sbjct: 243 RPSFPSNSTRRNTVHHRGE---HPQQQQYQQQPPSSSR-TASERSMSAML 288
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 282 KPSFPRLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMAVYL 133
+PSFP R+ + H G +P++ Q Q+Q S+R E SM+ L
Sbjct: 291 RPSFPSNSTRRNTVHHRGE---HPQQQQYQQQPPSSSR-TASERSMSAML 336
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 282 KPSFPRLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMAVYL 133
+PSFP R+ + H G +P++ Q Q+Q S+R E SM+ L
Sbjct: 447 RPSFPSNSTRRNTVHHRGE---HPQQQQYQQQPPSSSR-TASERSMSAML 492
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
1B protein.
Length = 1107
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 282 KPSFPRLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMAVYL 133
+PSFP R+ + H G +P++ Q Q+Q S+R E SM+ L
Sbjct: 447 RPSFPSNSTRRNTVHHRGE---HPQQQQYQQQPPSSSR-TASERSMSAML 492
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 282 KPSFPRLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMAVYL 133
+PSFP R+ + H G +P++ Q Q+Q S+R E SM+ L
Sbjct: 291 RPSFPSNSTRRNTVHHRGE---HPQQQQYQQQPPSSSR-TASERSMSAML 336
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 541 TNKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 410
T KPR + V+ +++R NE+W+N L + V +++ L+ D
Sbjct: 266 TQKPR-LTVKQQAIKRENELWENNRLHRSGVVAMADELSSIFED 308
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 445
FQ HL LT ++ E + F P CP L + G IM+ G KF ND
Sbjct: 683 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 739
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 445
FQ HL LT ++ E + F P CP L + G IM+ G KF ND
Sbjct: 159 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,823
Number of Sequences: 27780
Number of extensions: 347733
Number of successful extensions: 890
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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