Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1427
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z93377-7|CAB07571.2|  197|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine re...    28   7.9  

>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 438 IQVASSTVLGISLFTLISLFYFIKSFKIVGSTVQYIF 328
           I  + S ++ + +F ++   YF+KSF+IV   +QY+F
Sbjct: 50  IYASESILICVGMFLMVYFNYFVKSFQIVHLNLQYLF 86


>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 423 STVLGISLFTLISLFYFIKSFKIVGSTVQYIFNIH 319
           ST+L I LF L       K+ K +GST    FN+H
Sbjct: 39  STILNIPLFVLAGYCILQKTPKSIGSTKWAYFNMH 73


>Z93377-7|CAB07571.2|  197|Caenorhabditis elegans Hypothetical
           protein F13A7.11 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 200 VENEKNAIRKKNIFPN*LNNNPSHTFSFLNLQ 105
           VE+ K    K+NI P    NNPS T  F NL+
Sbjct: 150 VEHGKEDFAKENISPE--VNNPSKTIGFYNLE 179


>AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 22 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/22 (54%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +1

Query: 610 FLF-ILTDVIIHQVAPKDVYNL 672
           FLF IL++++IH V+ +DV+NL
Sbjct: 217 FLFDILSNIVIHYVSREDVFNL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,177
Number of Sequences: 27780
Number of extensions: 238023
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)