Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1427
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.32 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 394 SKQANSQNSARRHLNRLKSSGFKRELVLIQHLRSYFEDENRSQNKLSDSKIL 549
           SK+ N +      ++RL++  F+ E     ++   FE++ R +  L D KIL
Sbjct: 85  SKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKIL 136


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 287 VYGLVSRPLGQWMLNMYWTVLP 352
           + G + R +  W+ ++ WT+ P
Sbjct: 165 INGALIRIIAIWLFSLGWTIAP 186


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 287 VYGLVSRPLGQWMLNMYWTVLP 352
           + G + R +  W+ ++ WT+ P
Sbjct: 131 INGALIRIIAIWLFSLGWTIAP 152


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 511 FHLQNKISDVGLAPIHV*SQSFLI 440
           F + N++ D    P+H   + F+I
Sbjct: 430 FQIANELEDASNIPVHATLEKFMI 453


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 287 VYGLVSRPLGQWMLNMYWTVLP 352
           + G + R +  W+ ++ WT+ P
Sbjct: 41  INGALIRIIAIWLFSLGWTIAP 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,151
Number of Sequences: 438
Number of extensions: 2916
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)