Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1422
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.4  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   5.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    24   9.7  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    24   9.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   9.7  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 183 TIPPPLSPLQTDVPSLYPAQ*VYSDVNLTKNSL*DLMQVSVSTTGISTRLSSSVATPVSS 4
           +IP PL+P  +D  SLYP    +S V   KN    +  ++V    I + L  ++   +SS
Sbjct: 534 SIPKPLTPKPSDSNSLYPLP--HSKVGRRKN----IPAITVPPPSILSILRKNIGKDISS 587


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 GTSVCNGDSGGGMVFKFGESWYLRGLV 223
           G  + N   GGG +++FG+++   GLV
Sbjct: 316 GWPMRNDTYGGGFMYQFGDNYVTVGLV 342


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 219 RPLRYQLSP-NLKTIPPPLSPLQTDVPSLYPAQ*VYSDVNLTKNSL*DLMQVSVSTTGIS 43
           + LR+ L P NL+ +   L PL+T   SL  +   Y    L   ++  L QV  S + +S
Sbjct: 130 KKLRFYLEPLNLQWV---LMPLETSAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVS 186

Query: 42  TRLS 31
           T+ S
Sbjct: 187 TKKS 190


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 51  PWLTLKPASGLTANSSS----DLHRSTLTAPDIEMEHRSVTATVVA 176
           P L   P++ L+ ++S     +   +T TAP +EM + S  A   A
Sbjct: 337 PTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAA 382


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 259 TSAFVLPGHGERHQAPEVPALAKLE 185
           TSA V PGHG     P+V A  ++E
Sbjct: 37  TSAIVEPGHGNLIIPPDVSAHYEVE 61


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 270  WLGSHLHSFCLATESDTRPLRYQLSPNLK 184
            WL + LH+  ++  S T+  +  L+PNLK
Sbjct: 1410 WLPNRLHNSKVSKLSFTKSNKSTLNPNLK 1438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,389
Number of Sequences: 5004
Number of extensions: 39231
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)