Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1422
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    36   0.014
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.17 
AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    30   0.70 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z68216-3|CAA92462.1|  126|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of a...    27   6.6  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    27   8.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 11  TGVATEELSLVEMPVVDTETCIRSYSEFFVRFTSEYTYCAGYRDGT-SVCNGDSGGGMVF 187
           + ++   L  + +P++ T  C  S   +  R       CAGY  G    C GDSGG ++ 
Sbjct: 189 SSLSAPTLREIHVPLLSTLFC-SSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMC 247

Query: 188 KFGESWYLRGLVSLSV 235
                W L G+VS  +
Sbjct: 248 ARDGHWELTGVVSWGI 263


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 119 TYCAGYRDGTSVCNGDSGGGMVFKFGES 202
           ++C    +  +VC+GDSGGG+ F   +S
Sbjct: 258 SFCTAEEEDKNVCSGDSGGGLTFHQSDS 285


>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 60  TLKPASGLTANSSSDLHRSTLTAPDIEMEHRSVTATVVAEWSSSL-ARAGTSG 215
           T K   G+   + ++LH +T  +P +   H+   +T     SSSL A AGT G
Sbjct: 173 TDKIMRGIDVETLTNLHTTTEPSPPLPRHHQIQASTTAGATSSSLSAAAGTRG 225


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 78   GLTANSSSDL-HRSTLTAPDIEMEHRSVTATVVAEWSSSLARAGTSGAWCRSPWPGRTNA 254
            G T  SSS +   S  T P         T T  +  S+S   + TSGA   S  PG T  
Sbjct: 960  GSTEGSSSPIPSTSQNTNPSTSSGSSMSTQTPQSSQSTSPVESSTSGATSSSGSPGTTLT 1019

Query: 255  DVTPA 269
             ++P+
Sbjct: 1020 SISPS 1024


>Z68216-3|CAA92462.1|  126|Caenorhabditis elegans Hypothetical
           protein F27C8.4 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = -1

Query: 259 TSAFVLPGHGERHQAPEVPALAKLEDHSATTVAVTDRCSISISGAVSVLRCKSDEEFAVR 80
           +SAFV+P + ++  A ++  +AK    S  + A  + C   +  A +   C  DE     
Sbjct: 15  SSAFVVPQNADQCGAVDITKMAKRYVPSQNSDATCEICLDLVLIAETYAEC--DEAIVQH 72

Query: 79  PDAGFSVNHGHLHQAELFCR 20
               + V H   H ++  C+
Sbjct: 73  HMDAYCVEHVKNHASQALCK 92


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 69  PASGLTANSSSDLHRSTLTAPDIEMEHRSVTATVVAEWSSSLARAGTSGAW 221
           PA G+    S+D         DIE E + V     A ++++L   G+  AW
Sbjct: 218 PAEGVEKEGSTDEFAKVKFEEDIEKEGKIVMLAAGASFTAALTDQGSVIAW 268


>U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform a protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 214 GPGVALRGQAERMQM*PQPLRSVQRLG 294
           G GVAL  +  ++Q  PQP  S+ RLG
Sbjct: 165 GSGVALSPKRSQVQFPPQPEGSLSRLG 191


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 312 SQGRNLAKSLNTT*WLGSHLHSFCLATESDTRPLRYQLSPNLKTIPPPLSPLQTDVPS 139
           ++   ++ +  +T WL +        TE  T      L P+L TI PP++ L   +PS
Sbjct: 559 TESTTVSSTTQSTTWLPTEPSFATGETEITTASPTITLFPSLSTILPPINSLAGVLPS 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,520
Number of Sequences: 27780
Number of extensions: 224950
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)