Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1421
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    31   0.21 
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    29   0.64 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.5  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   4.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   5.9  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   7.8  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 335 SVKLYKGYGLPKTRIECSSAVDNLRQS-NKTSVTEVTFHKSLIPD 204
           S+   +G G+P   I  SS   NL ++ N TSV    FH S+  D
Sbjct: 127 SLPASQGGGMPSPAIYSSSMATNLNKNINSTSVPAYNFHNSMTSD 171


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 311 GLPKTRIECSSAVDNLRQSNKTSVTEVT 228
           G  + ++EC  A+D  RQS++T V+++T
Sbjct: 126 GTSRIKLECFPALDYARQSHETRVSKIT 153


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 587 EKKLAQQNSFVFLAHIF*DRSIQYIYSKSINQTI 688
           +KK   Q+ ++F++H+  + S Q ++S+S  Q I
Sbjct: 793 KKKSVSQSYYIFVSHVTANYSNQLLFSQSFYQGI 826


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 374 ILTSINRLSEFRDSVKLYKGYGLPKTRIECSSAVDNLRQS 255
           I T +N L  F D V +   YG+ +  +E S   D+  +S
Sbjct: 51  IATRLNELIGFEDEVVINFVYGMLEEAVEASKTSDSQNES 90


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 445 YFINNIRSILTLYPTYSTYLS 383
           Y +NN  S+L +   Y TYL+
Sbjct: 466 YMVNNYESVLLMEDVYETYLA 486


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +2

Query: 107 AVISSTNQSNKKKVVTTLSIEEP--KARRRSIAS 202
           A+I  TN++N+++   + SIE P   +R+R++AS
Sbjct: 22  ALIDCTNKTNQREHSPSFSIEIPTTPSRKRTLAS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,100
Number of Sequences: 5004
Number of extensions: 51178
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)