Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1421
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    30   1.5  

>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 661 NILYRSILKNVRQKNKAILLCELFLTLVYVL 569
           N+L R   K+ ++KNKAI + +   +L+YVL
Sbjct: 327 NLLARQYYKHFKKKNKAIAVLDSIFSLLYVL 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,505,064
Number of Sequences: 37544
Number of extensions: 302077
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)