Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1420
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    29   0.70 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   3.7  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   4.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.5  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    25   8.6  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 216 RSTSETWG*HEWEMLLLYYVIQNKYTKMQLVIRCL 320
           RS S  WG   WE +L+  VI  + T  Q V+  L
Sbjct: 278 RSKSRVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 209 LNKEYLRDMGITRMGDVIAILRHSK-QVHENAARDKVLSNTSVNKVPVAAITGRSTLPQP 385
           +N ++L +  IT      A  R  K + H + A  K+ +    NKV   A+T +STLP  
Sbjct: 160 MNNQFLMNKPITVS---YAFKREGKGERHGDIAERKLAAAAKKNKV---AVTPQSTLPPG 213

Query: 386 SSPAS 400
            SPA+
Sbjct: 214 FSPAT 218


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 128 LL*RNLPTYRLG-LNPFCCFLHSFYNKYQIT 39
           +L +N+P Y  G  NP C   H+F ++Y+ T
Sbjct: 122 ILIKNIPKYIPGWTNPICIGRHAFGDQYKST 152


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
 Frame = +2

Query: 128  AGIPSDVAATYALTFTENRI-QSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAA 304
            A + +D+   +  T     + QSD+ +D+N+E   D G T  G       H      +  
Sbjct: 969  AYVGTDMTNAFGTTTKPKDVSQSDIKVDINRESNSDNGETITG------THDVYRQTDNP 1022

Query: 305  RDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLKRKAVQP 484
              K+ S+T+ +KV     T   T+ QP+     +  + T N           L+  +V+ 
Sbjct: 1023 EIKLPSDTASSKVD----THNPTVTQPTDDTGGLNSYNTEN----PLLTNNTLEPSSVEA 1074

Query: 485  NDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQT 598
              +  +S+K+ K+++        L  L++S   +N  T
Sbjct: 1075 IVSSKDSDKHAKESK-----GKSLAPLISSRVSTNDTT 1107


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 LRDMGITRMGDVIAILRHSKQVHENAARDKVLS 322
           +R  G    GDV+  +RH++Q+     R K +S
Sbjct: 148 IRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,829
Number of Sequences: 5004
Number of extensions: 46107
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)