Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1420
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1348 + 32807308-32807874                                         40   0.001
06_01_0553 + 3942907-3943617                                           37   0.011
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   2.2  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   5.0  
08_01_0070 + 490655-493165                                             28   6.6  
09_02_0295 - 7039870-7040634                                           27   8.7  
03_05_0639 - 26323328-26323630,26323962-26324057,26324458-263247...    27   8.7  

>04_04_1348 + 32807308-32807874
          Length = 188

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 107 WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 286
           W ++ + A +   VA  YAL F+ N +++D L   + E+L  MG++     + IL+ +++
Sbjct: 5   WYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILKLARR 64

Query: 287 VHENAA 304
               AA
Sbjct: 65  SRRRAA 70


>06_01_0553 + 3942907-3943617
          Length = 236

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +2

Query: 107 WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 286
           W ++   AG+  DVA  YA  F  N + +D L  L+   L  MG       + I +H  +
Sbjct: 3   WYAWLCRAGLHPDVAFEYARLFARNELAADDLRHLDHGLLATMG-------VPIAKHRLE 55

Query: 287 VHENAARDKVLSNTSVNKVPVAAITGRST 373
           + + A R+   S++S + +    +  R+T
Sbjct: 56  ILKLARRESPPSSSSSSSLAAVRLPWRAT 84


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 115 FLHNSWYTIRCGCYICTYIYREQDPE*YAVGSE*GVPQRHGDNTNGRCYC 264
           +LH+ +  I+ G Y   +IY  QD + ++  SE G   R    T GRC C
Sbjct: 151 YLHSIYRKIKEGRYTDLFIYGYQDADKFS-SSEFGALFREEAATIGRCPC 199


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 341 VPVAAITGRSTLPQPSSPASRILEHYTRN 427
           V ++  T R + P PS   SR+ EH T N
Sbjct: 836 VTISQETNRDSQPSPSGMMSRVTEHETNN 864


>08_01_0070 + 490655-493165
          Length = 836

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 603 NTVCLLDGASLVTSWVSPVDPKRMRRA 523
           NT C+LDG  +V  W   V P+  RRA
Sbjct: 255 NTTCILDGDDMVRCWGVEV-PEEYRRA 280


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 300 AFSCTCFE*RNIAITSPIRVIPMSLRYSLFRSNSISLWILFSVNVSAYV 154
           AF  + F+  ++  T P+  + + +  ++  +  +SLW L  +NV+ YV
Sbjct: 204 AFCRSLFKHSSLHSTVPMIQVGVYVELTILIAAIVSLWTLVGINVTPYV 252


>03_05_0639 -
           26323328-26323630,26323962-26324057,26324458-26324730,
           26325266-26325398,26325507-26325553
          Length = 283

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 401 RILEHYTRNXXXXXXXXXXXLKRKAVQPNDNIDESEKNLKKARLIRFG-STGLTQLVTSE 577
           R+LEH  R            +  KA  P+D+ DE EK+  K  ++      G +QL  + 
Sbjct: 59  RVLEHPYRAQDTKKAMLLHLIPGKATAPSDDDDEEEKDNGKDYIVYCADEIGPSQLDNAP 118

Query: 578 APS 586
            PS
Sbjct: 119 QPS 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,136
Number of Sequences: 37544
Number of extensions: 298747
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)