Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1416
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 1.2
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 28 1.6
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 2.9
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 5.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 5.0
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 6.6
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 6.6
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 6.6
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 6.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.7
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 151 DSPDRVNGSSVPTDLALVNKHLEGLSVT 234
+SP VNGSS P +L V ++ E ++T
Sbjct: 605 NSPQPVNGSSPPYELVFVTRNTEEATIT 632
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 644 PFYLNFRLQNYQLCVMFCEYLYNLGYW 724
PF LN+ ++N ++ + FCE Y+ Y+
Sbjct: 139 PFVLNWGVRNRKVIIRFCEQGYSFFYY 165
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 402 TGSNPDGTGSNRTGAALASRHGRGVS 479
T S+P GT S+ + ++ +S+H G+S
Sbjct: 462 TQSSPSGTNSSTSTSSTSSKHSTGIS 487
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 286 SAWGPSFSVRSGCYSRMTSRSDLRDACSPGPGRLARRNR*P 164
SA G S SVR G Y+ ++S+ D + S GP N P
Sbjct: 653 SAIGRSTSVREGRYAGISSQMDSLNMDSTGPSASNMANAPP 693
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = -3
Query: 645 GVAVFYAQYYQIVLPYSAHNITELINDVEFHSQVGSCYI 529
G A+FY+ + Q + N ++ + ++H + CY+
Sbjct: 1252 GSAIFYSAWNQCIAEVIRRNPIDIYHINDYHGALAPCYL 1290
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 633 FYAQYYQIVLPYSA-HNITELINDVEFHSQ 547
F + +++ P + H T+++NDV+FH Q
Sbjct: 217 FTSSETKVISPIAKYHRHTDIVNDVQFHPQ 246
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 88 YVYGEQNLSHADHDLLEPLSRDSPDRVNGSSVPTDLALVNKHLEGLSVTSS 240
+V+GE N+ LL LS + D+ + S++P D + N HL L++ S
Sbjct: 273 FVFGE-NMDRNSSGLL--LSDELLDQYSISNIPKDESKRNSHLSILAIVDS 320
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 642 VAVFYAQYYQIVLPYSAHNITELINDVEF 556
+A + QI PY HNI + ++ ++F
Sbjct: 455 IAKLQNNHSQITFPYKRHNIHKSVDSIQF 483
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 607 HYLVILCIEYSNTILFEFSTSELSVMCN 690
H L I+C++ + + L EFS +L V N
Sbjct: 364 HSLSIICLDMAISYLMEFSLEDLFVASN 391
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 254 GVLQPDDVTLRPSRCLFTRA-RSVGTEEPLT 165
GVL P V +P CLF + S +EE LT
Sbjct: 66 GVLNPSSVRGKPVACLFVASLNSSRSEEELT 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,653
Number of Sequences: 5004
Number of extensions: 65077
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -