Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1415
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 677 SFYIIFILIDCCQLV 633
           S+Y+I I I CC LV
Sbjct: 242 SYYLIQIYIPCCMLV 256


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 677 SFYIIFILIDCCQLV 633
           S+Y+I I I CC LV
Sbjct: 242 SYYLIQIYIPCCMLV 256


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 288 FKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPL-SSLDVSSKCD 416
           + + ++  Q H  +KGL  S   ++ T LPQ +  + + S++ D
Sbjct: 261 YNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTKETSTRTD 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,576
Number of Sequences: 438
Number of extensions: 4622
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)