Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1413
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 29 0.48
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 1.9
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 26 2.6
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 2.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 3.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 3.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 4.5
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 5.9
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 5.9
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 7.9
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.9
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 28.7 bits (61), Expect = 0.48
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 278 LKTALYSMSVNYNTCNNLSEENLLRF 201
L T LY++S+ YN CN LS + R+
Sbjct: 531 LLTGLYAVSLLYNFCNTLSRDVYTRY 556
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 79 VQGPIDQKKTAVHSVKPKTTQRFDNPKSEPIELAFINISKMNLSRFSSD 225
V G ID K V P+ + + P+ L N+S+ NLS+ +SD
Sbjct: 192 VNGIIDALKRVDEIVVPQNNFQSALEHAVPVSLDTQNLSQQNLSKSNSD 240
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 268 LFIRCRSIITHVIIYQKKICSDSFWKYL*MLIL 170
L + C SIITH+ Y+K + S + L M+++
Sbjct: 17 LVLSCISIITHLKNYKKPVLQRSVVRILMMIVI 49
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 40 RNAKETRTATATIVQGPIDQKKTAV--HSVKPKTTQRFDNPKSEPI 171
R A E + T+ Q P H++ PK FDN ++ PI
Sbjct: 256 RRASELHSRPVTVFQEPQRSASQPYESHALSPKVAPLFDNSQATPI 301
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 136 TQRFDNPKSEPIELAFINISKMNLSRFSSDKLLHV 240
T +D P S+ +++ FIN NLS + L+ V
Sbjct: 464 TMAWDLPASDDVQIEFINFFLNNLSILTEKALMSV 498
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -1
Query: 323 RSIQIRLS*KKVAKQLKTALYSMSVNYNTCNNLSEENLLRFILEIFINANSIGSDLGLSN 144
R++ +RL+ KK+ K + LY+ +++ EN+ ++E F+ +I + S
Sbjct: 961 RNVTLRLT-KKLKKPITLPLYADHIDFCDNKTYERENIDAGVVESFVVGTNIEGEQYASE 1019
Query: 143 L 141
L
Sbjct: 1020 L 1020
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 37 LRNAKETRTATA-TIVQGPIDQKKTAVHSVKPKTTQ-RFDNPKSEPIE 174
L K RTAT+ + + P+ + +++ P+ RF NPK +PIE
Sbjct: 627 LTRPKPVRTATSQSKIPKPVKHIPSDSNNLDPQLGPWRFANPKVDPIE 674
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 103 KTAVHSVKPKTTQRFDNPKSEPIELAF 183
K+ + V K TQRF N +E + LAF
Sbjct: 746 KSGLTRVTSKPTQRFANELAEDMSLAF 772
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 157 KSEPIELAFINISKMNLSRFSSDKLLHVL 243
K E IEL +N+ SR+S+ K+L L
Sbjct: 335 KEEGIELCILNMKHKGKSRYSTIKVLDYL 363
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 55 TRTATATIVQGPIDQKKTAVHSVKPKTTQRFDNPKSEPIELAFINISKMNLSRFSSD 225
T T T+T GP+ K A S KP T + P + + ++ L+++S+D
Sbjct: 379 TDTTTSTSKTGPLFGNKPADPSAKPGATASTTPSEPPPSSIKHKTLQEI-LNKWSTD 434
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 352 YCXIASLRSDVSSDVQ 399
YC + RSDVSS VQ
Sbjct: 62 YCEVCHSRSDVSSQVQ 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,094
Number of Sequences: 5004
Number of extensions: 33836
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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