Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1413
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0521 + 3867922-3867967,3868282-3868544,3868680-3868744,386...    29   1.9  
01_01_0243 - 2002383-2002512,2002733-2002884                           27   5.9  
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072...    27   7.8  
08_02_0324 - 15766862-15766871,15767041-15767741                       27   7.8  

>07_01_0521 +
           3867922-3867967,3868282-3868544,3868680-3868744,
           3868828-3868990,3869798-3869946,3870041-3870289,
           3870860-3871028,3871110-3871202,3871703-3871952,
           3872127-3872217,3872673-3872769
          Length = 544

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 194 EIFINANSIGSDLGLSNLCVVLGLTE*TAVF--FWSIGPCTIVAVAVRVSF 48
           +IF+    IGS LG++ + +V GL     +   ++SIG   I+ V  + SF
Sbjct: 352 KIFLATTIIGSALGMTQVLLVTGLNRQFGISDEWFSIGDSLIITVLSQASF 402


>01_01_0243 - 2002383-2002512,2002733-2002884
          Length = 93

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 106 TAVHSVKPKTTQRFDNPKSEPIELAFINIS 195
           TAV S   +  QR D  +S  + LA++N+S
Sbjct: 39  TAVRSADGELRQRLDTRRSNWVNLAYVNLS 68


>10_08_1027 -
           22404169-22404807,22406148-22406360,22407062-22407255,
           22407422-22407566,22407801-22407875,22408222-22408380,
           22408466-22408645,22408756-22409243,22409375-22409738,
           22409811-22409943,22410023-22410153,22410247-22410354,
           22410451-22410897,22411425-22411514,22411607-22411915,
           22412209-22412320,22412488-22412699
          Length = 1332

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 53  SFALRKIKMSILECLC 6
           S+ LRK KM ++ECLC
Sbjct: 415 SYTLRKSKMLLVECLC 430


>08_02_0324 - 15766862-15766871,15767041-15767741
          Length = 236

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 192 NIYK-C*FYRFGLRIIESLCCFGF 124
           NI K C +YR+G   + SLC  GF
Sbjct: 98  NIVKACQWYRYGALFVRSLCIHGF 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,345,691
Number of Sequences: 37544
Number of extensions: 175389
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)