Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1413
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78200-7|CAB01586.1|  284|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5 prot...    27   7.0  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    27   7.0  
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z78200-7|CAB01586.1|  284|Caenorhabditis elegans Hypothetical
           protein T04H1.10 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 215 FLLINYYMCYN*PTSNKEPFLIVLQPFFNLTLFVYSFIS*FRFTSCIVXLPHYDLTLAQM 394
           F   +Y+ C N   SN E  + ++ P F   L ++  I   RF S  V L   D  + + 
Sbjct: 146 FFFESYWNCLNDYFSNFEMIITIVYPIFG-ALLMFEIIKSARFAS--VTLSRQD-AIERY 201

Query: 395 FKGNLIQCVKV 427
             G +I C+ +
Sbjct: 202 RSGRMIMCMTI 212


>AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical
           protein Y66A7A.5 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 KPKTTQRFDNPKSEPIELAFINISKMNLSRFSSDKLL 234
           KPK   ++   + E +E A++   KMN S + S  LL
Sbjct: 459 KPKPKSQYSKFEDETMEKAYMRTVKMNPSSYESRDLL 495


>AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5
           protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 KPKTTQRFDNPKSEPIELAFINISKMNLSRFSSDKLL 234
           KPK   ++   + E +E A++   KMN S + S  LL
Sbjct: 459 KPKPKSQYSKFEDETMEKAYMRTVKMNPSSYESRDLL 495


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 293 FFNLTLFVYS-FIS*FRFTSCIVXLPHYDLTLAQMFKGNLIQCVKVG 430
           +F    F+++ FI+   F    + +P+ ++ L Q+F+ +L + +K+G
Sbjct: 129 YFRFPFFLFNHFIAVLFFVPPYLSIPNQNMALDQIFQPDLPEWIKIG 175


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 314 QIRLS*KKVAKQLKTALYSMSVNYNTCNNLSEENLLRFILEIFINANSIGSDL 156
           Q+ ++ KK+ KQ+  A   ++   N  N+   EN+   I E+   A  I S++
Sbjct: 8   QLNIARKKIQKQINQAKQLVNEFNNGLNSTDNENIYDTITEVADVATEIQSEM 60


>AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical
           protein H27M09.3 protein.
          Length = 605

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 16  SSMDIFILRNAKETRTATATIVQGPIDQKKTAVHSVK-PKTTQRFDNPKS 162
           +S D+  LR  +E +     +V+G  DQKK     ++  K T + ++ KS
Sbjct: 164 NSSDVHKLRAMEEEKRILEEVVEGLRDQKKCLADDIRTKKATLKAESKKS 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,198
Number of Sequences: 27780
Number of extensions: 188868
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)