Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1413
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 327 MKEYTNKVKLKKGC 286
           MK Y N+++L+ GC
Sbjct: 370 MKHYENEMRLRNGC 383


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 248  NYNTCNNLSEENLLRFI 198
            NYNTC+ +    ++R I
Sbjct: 1660 NYNTCDRIKRGTVIRSI 1676


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 460 HVASYLRAFKTDFNALYQITF 398
           +V +YL  +K DF     ITF
Sbjct: 205 NVPAYLNTYKGDFPTETDITF 225


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 295 KRLQNN*KRLFIRCRSI 245
           + +Q++ K+LF +C+SI
Sbjct: 86  RSMQDSTKKLFNKCKSI 102


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 293 FFNLTLFVYSFIS*FRFTSCIVXLPHYDL 379
           F+N    +YS +S F     I+   +Y++
Sbjct: 338 FYNTDFIIYSSLSSFYIPCIIMVFLYYNI 366


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 275 KTALYSMSVNYNTCNNLSEENLLRFILEIFINANSIGSDLGLS 147
           KTA+ S  +  +   + SEE L + IL +  + +S  S +  S
Sbjct: 339 KTAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSS 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,082
Number of Sequences: 438
Number of extensions: 2363
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)