Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1412
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    29   0.58 
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    28   1.0  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   4.1  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   5.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.2  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   7.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.5  

>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +3

Query: 258 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHH 437
           QT LQ +   N     +   L+  E I+ V +  P    D++++  A Y  TLI NK+  
Sbjct: 13  QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKIIR 70

Query: 438 ELNQFCSAHTLHEVYIDLF 494
               F   ++L     D++
Sbjct: 71  ARLSFLDEYSLRVFAKDVY 89


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 422 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 330
           + + PV F   V  H+  + W++L DY+ +F
Sbjct: 48  QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/93 (20%), Positives = 42/93 (45%)
 Frame = +3

Query: 225 MIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEY 404
           + P  TS   ++T L   E  +      G +L+Y   + ++N ++ +S+LD     +   
Sbjct: 295 LFPEATSMLVVETVLP--EGPSFKKLKEGDILLYVNSMILINLIELESILDE----SVGK 348

Query: 405 DRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQI 503
           D  L   +    +   C+A + H++  D + ++
Sbjct: 349 DVVLTVQRGSELVELTCTAQSTHDIAPDRYVEV 381


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 173 INTNMSFFYFMKGKMNRDPYSQNHNGQNRRLVSHS 69
           + T++ F  F+KGK   D +    +G+    V HS
Sbjct: 153 VETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHS 187


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 189 LLPVTSQAGFHMMIPLLTSYKAIQTTLQTDE 281
           +LP +S+   H + PL T+ + +   L++DE
Sbjct: 437 MLPTSSEDNLHPLQPLTTADEEMDLDLKSDE 467


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 138 LHKVEEGHVGVYYRG 182
           L K+EEG  G+ YRG
Sbjct: 77  LEKIEEGSYGIVYRG 91


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 414 ESCHIQL*SCAPYLVRFVGPAY 349
           E+C  QL +  PYL+R++   Y
Sbjct: 322 ENCSFQLYNLFPYLIRYLSDDY 343


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 27/110 (24%), Positives = 48/110 (43%)
 Frame = +3

Query: 189  LLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQS 368
            L  V +    H   P++TS+   ++ +   E+K++         +  E  E + KLD  S
Sbjct: 736  LRKVCNHPNLHEERPIVTSFALRRSAIADLEIKDLLVRKR----LLHE--EPMTKLD-LS 788

Query: 369  VLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 518
             L ++R  +  +D       V  ELN  C+ +  + +   L  QIDE  +
Sbjct: 789  TLRLIRTDSEAFDTF-----VSDELNSLCATNAYNRISTFLRMQIDEECK 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,797
Number of Sequences: 5004
Number of extensions: 47037
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)