Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1412
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   210   4e-55
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    33   0.099
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    33   0.099
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.53 
U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  210 bits (514), Expect = 4e-55
 Identities = 96/147 (65%), Positives = 117/147 (79%), Gaps = 1/147 (0%)
 Frame = +3

Query: 93  LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 269
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL   +  G+HM IP LT+ K++Q TL
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64

Query: 270 QTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQ 449
           QTDE  NVPCGTSGGVLIYF+RIEVVN L   SV  +V+N+T +YDR LIFNKVHHE+NQ
Sbjct: 65  QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124

Query: 450 FCSAHTLHEVYIDLFDQIDENLRTALQ 530
           FCS HTL EVYIDLFD+IDE ++ ALQ
Sbjct: 125 FCSVHTLQEVYIDLFDKIDEEIKNALQ 151


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 31/143 (21%), Positives = 60/143 (41%)
 Frame = +3

Query: 99  IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 278
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 279 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 458
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 459 AHTLHEVYIDLFDQIDENLRTAL 527
            HTL E+  D  ++I  +++ +L
Sbjct: 166 THTLSEILSDR-EKISADMKISL 187


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 31/143 (21%), Positives = 60/143 (41%)
 Frame = +3

Query: 99  IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 278
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 279 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 458
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 459 AHTLHEVYIDLFDQIDENLRTAL 527
            HTL E+  D  ++I  +++ +L
Sbjct: 166 THTLSEILSDR-EKISADMKISL 187


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 357 DPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQRI 536
           DP  +  ++R F ++Y+R   F+    +L  F  A T H+V  D    I ++  TA +++
Sbjct: 43  DPSDMFVIIRFFVSDYERFRKFDMGPTKLASF-MAKTFHDVRADYVSTISKDASTAARQL 101


>U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical
           protein B0432.10 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 330 ERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDE 509
           +++ + N+     +++++   TA+YD  ++     H L Q    + +H+    L   I+E
Sbjct: 164 QQLSLANETMENRMIEVLMEATAKYDDIVVIRHSFHRLIQLAQTYRMHK----LMRVIEE 219

Query: 510 NL 515
           NL
Sbjct: 220 NL 221


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 194 TSYKSSWFSHDDTTSNIIQSHSD 262
           TSY  +W ++DDT  +I++  +D
Sbjct: 107 TSYSITWMTYDDTLKSIVEYGTD 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,123
Number of Sequences: 27780
Number of extensions: 262710
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)