Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1411
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.2  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   3.7  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   6.5  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   8.7  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 351 NSYILFCNKMAQELPIKVKESIQKIIQRENFVSHDVETKK 470
           NSY L         PI + E+I+KI+++  F      TK+
Sbjct: 813 NSYFLLPTVSRHYRPITIFEAIRKILKKREFAKKPTMTKR 852


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 435 ENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGCKEMSLFVKQIIHNAERISI 602
           + FVS   E  K    G GF     V  +   ++DGCK++S  ++  +    +I++
Sbjct: 312 DEFVSKLTEKVKTIKVGDGFDSSSAVGPL--ISQDGCKKVSKHIEDAVSKGAKITV 365


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 336 VKLSGNSYILFCNKMAQELPIKVKESIQKIIQRENFVSHDVETKKIYPD 482
           VK   NS++L+      E+P    +SI +II  + + +   + KK Y D
Sbjct: 16  VKRPLNSFMLYRRDRQAEIPTSNHQSISRII-GQLWRNESAQVKKYYSD 63


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +3

Query: 411 SIQKIIQRENFVSH-----DVETKKIYPDGSGFMGDLYVVD 518
           SI K+ + E+  SH          ++Y DG GF+G  +  D
Sbjct: 431 SISKLQEHESSCSHVERLFGFAPNRLYDDGDGFLGSSFCSD 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,190
Number of Sequences: 5004
Number of extensions: 54900
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)