Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1411
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0043 + 10549914-10550240,10550417-10550587                       29   3.8  
07_03_0361 + 17215312-17216217                                         28   6.7  

>01_02_0043 + 10549914-10550240,10550417-10550587
          Length = 165

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 212 LRKNYQINTFVYISLF-VSVLHICLNIHVTQAYGI*RLNI 96
           LR  Y +  F Y  +  V V+++C +I+V   Y   RLN+
Sbjct: 125 LRSAYNLKRFSYRKIVSVEVIYVCNHIYVHMTYATIRLNM 164


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 381 AQELPIKVKESIQKIIQRENFVSHDVETKKIYP---DGSGFMGDLYVVDVRGTTKDGCKE 551
           A+EL   ++ + ++++  E   SH V + +IYP   + S   GD+  + V G   D  +E
Sbjct: 80  AEELDGALRAAKERLVVVEFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRE 139

Query: 552 M 554
           +
Sbjct: 140 L 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,883
Number of Sequences: 37544
Number of extensions: 270352
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)