Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1411
         (609 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    32   1.8  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 78  YEF*WIYI*PLNTISLC-HVYV*TNM*Y*YKQTDVYEGVYLIIFAQLVHYVVYKVALYIG 254
           Y F +IY+     I +C ++Y+     Y Y     Y  +YL IF  L  ++   + LYI 
Sbjct: 40  YIFTYIYLYIFIYIYICLYIYL-----YIYLYIFTYIYIYLHIFIYLHIFIYICICLYIF 94

Query: 255 VFLFILFTIY 284
           +++FI   IY
Sbjct: 95  IYVFIYINIY 104



 Score = 29.5 bits (63), Expect = 9.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 177 VYEGVYLIIFAQLVHYVVYKVALYIGVFLFILFTIYAII 293
           +Y  VY+ I+  +  Y+   + LYI ++++I   IY  I
Sbjct: 25  IYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYI 63


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,044,287
Number of Sequences: 237096
Number of extensions: 1601137
Number of successful extensions: 3083
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3081
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)