Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1411
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   2.6  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    28   4.5  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    27   7.9  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +3

Query: 372  NKMAQELPIKVKESIQKIIQRENFVSHDVE 461
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +3

Query: 372  NKMAQELPIKVKESIQKIIQRENFVSHDVE 461
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +3

Query: 372  NKMAQELPIKVKESIQKIIQRENFVSHDVE 461
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 433 EKTLYLTMLKQRKYIQMDLDLWATYML*MSEEQ 531
           EK+  +T L Q+K    DL LW T+++  S+++
Sbjct: 184 EKSAVITSLLQKKNFDGDLMLWLTFLIRESDQR 216


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 191 LSD-NFCAISALRCLQSGLIYRSIFVHFIHNLCNYNVISLIKNIF 322
           LSD NF  +SA RC   G  +  I VHFI+        SL +N F
Sbjct: 84  LSDFNFSLLSA-RCSLVGTTFALILVHFIYRYLAIQNSSLTRNNF 127


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 226 LFTKWPYI*EYFCSFYSQ-FMQL*RNLTNKEY 318
           L T+ PYI   FC+ YS  FM L R +  K Y
Sbjct: 98  LATRIPYIFGLFCASYSTVFMVLERTIATKNY 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,041
Number of Sequences: 27780
Number of extensions: 301034
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)