Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1410
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270...    29   5.4  
12_02_0829 + 23523712-23523775,23523827-23523984,23524093-235241...    28   7.1  

>04_03_0830 -
           20125827-20125913,20126262-20126357,20126974-20127053,
           20127124-20127220,20127457-20127544,20128491-20128576,
           20129358-20130530
          Length = 568

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 311 PLHPPPASMITSTELSH 261
           P HPPPAS  +ST  SH
Sbjct: 71  PFHPPPASASSSTPTSH 87


>12_02_0829 +
           23523712-23523775,23523827-23523984,23524093-23524149,
           23524611-23524775
          Length = 147

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 598 RLFCLSDILRVNRRAILRLKNW--KKYQN 518
           + F  SD L +NR A  RL +W  +KYQN
Sbjct: 8   KTFLTSDELFMNRNATARLNSWRRRKYQN 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,851,772
Number of Sequences: 37544
Number of extensions: 345569
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)