Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1405
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   2.8  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   3.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.7  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 601 SRIGGSWG*HPSLEVVYS-LRR*ITRID-NLLLVI 503
           +R+ G WG  P L +VYS   R I + D N+L V+
Sbjct: 93  TRLLGHWGTCPGLSIVYSHCNRIINKYDLNMLFVV 127


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 375 NKYFTF*GHGNSFSFFIEFKNSKKKFT 455
           N Y  + GHG+  +    +K  KK+FT
Sbjct: 79  NLYMEYCGHGDLANLIQRYKEEKKRFT 105


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -2

Query: 317 LRERGPKFTGLKKLKLNLTMDL-----LANIGLLRRTNLRRELYTWRFKYIKNRALFHF* 153
           L+E  PKFT    L+  LT+D+      +N  L     L R   + +  ++ N  LFH  
Sbjct: 327 LQEYSPKFTLFSLLQTVLTLDVETVRAFSNNILEGLAELHRLGISHKSLHLDNVVLFHSG 386

Query: 152 NLTFRN*SNLTFT 114
           + TF    +  FT
Sbjct: 387 HRTFAKLMDFGFT 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,820
Number of Sequences: 5004
Number of extensions: 41281
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)