Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1402
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 596 GVKWLLEAINVYNVNTPPTLRYKF*GLKYSYNS 498
           GVK L+  +N  ++  PP    +F  +K   +S
Sbjct: 144 GVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSS 176


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 289 SRITSTLYEKHHIIEIKPA*IIVYVNTNYTLL*LPSQVISIVTQ 158
           SR  S +  +  I ++KP    +Y   NY+L  +P+   S  T+
Sbjct: 348 SRFISGIRSEQTIFDVKPEFGSIYFLGNYSL--VPTTTASPTTE 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,641
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)