Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1401
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...   129   5e-31
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   6.7  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   8.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   8.9  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.9  

>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score =  129 bits (311), Expect = 5e-31
 Identities = 55/88 (62%), Positives = 68/88 (77%)
 Frame = +2

Query: 2   LDVEAITTRKKPNLILNVDGIVAAAMVDLFRHCQLFTQDEGNNYIQMGSINALFVLGRTI 181
           L VE +TT KK NLILNVDG +A   VDL R+C  FT +E N YI +G +N +FVLGR+I
Sbjct: 528 LAVENVTTSKKDNLILNVDGCIAVCFVDLLRNCGAFTLEEANEYINLGILNGMFVLGRSI 587

Query: 182 GLVGHYLDQKRMKQPLYRHPWDDITYMS 265
           GL+GH+LDQKR++ PLYRHPWDD  Y+S
Sbjct: 588 GLIGHHLDQKRLRAPLYRHPWDDFLYLS 615


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 671 LVVFRIMSGKYIMLFPNMSQILNCS 745
           +V+F + +G  +M F    Q+L+CS
Sbjct: 228 IVIFNLKNGSILMEFKQDGQVLSCS 252


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 232 VQRLLHPLLVQVMSDQTYRATQDEQSVD*AHLNIIIAFILR 110
           V   LHP L+Q  ++  +R     +S+   HL   +A+ ++
Sbjct: 306 VDTKLHPYLIQAAANYEHRTRMGNKSI--FHLEAFVAYFMK 344


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 242 TDDGTEAASSSSGPSNVRPDLS 177
           T +G EAAS S+   NVRP L+
Sbjct: 45  TPNGKEAASPSALKQNVRPSLN 66


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 130 LYSDGLNQRSVRPGSHDRSGRTLLGPEEDEAASVPSSVGRHHLHVASELSDPV 288
           L   GLN  S+ P S   +    L   +DEA  +PS   + +++ +  L+  V
Sbjct: 71  LPDQGLNLPSIAPPSLSHASSPNLSNSQDEAECLPSDRQQDYINPSLHLNRTV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,887
Number of Sequences: 5004
Number of extensions: 64154
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)