Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1401
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 101 8e-22
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 31 1.3
04_04_0225 + 23745404-23747788 29 3.1
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 29 4.0
05_04_0114 + 18090593-18092248 28 7.1
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 7.1
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174 28 7.1
03_06_0569 + 34789286-34790052,34791216-34791512,34791604-347918... 28 7.1
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 28 9.3
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 28 9.3
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 101 bits (241), Expect = 8e-22
Identities = 42/86 (48%), Positives = 60/86 (69%)
Frame = +2
Query: 2 LDVEAITTRKKPNLILNVDGIVAAAMVDLFRHCQLFTQDEGNNYIQMGSINALFVLGRTI 181
+ VE T K NL+LNVDG + + +DL +F++ E + +++G +N LFVL R+I
Sbjct: 538 VQVETYTLSKANNLVLNVDGAIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNGLFVLARSI 597
Query: 182 GLVGHYLDQKRMKQPLYRHPWDDITY 259
GL+GH DQKR+KQPLYRHPW+D+ Y
Sbjct: 598 GLIGHTFDQKRLKQPLYRHPWEDVLY 623
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 62 IVAAAMV----DLFRHCQLFTQDEGNNYIQMGSINALFVLGRTIGLVGHYLDQKRMKQP 226
++AAA+V + CQ++ + +G + S+ +LG + LVG ++++R +P
Sbjct: 637 LLAAALVWLLGSILNSCQVYERADGRAQLLQSSVQVPMLLGSLLFLVGAVVNRRRRPEP 695
>04_04_0225 + 23745404-23747788
Length = 794
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 351 STIVTSQRQTSSPQWNVNFCLCVVILVYSFGLGRDRVVCARNE*QQ 488
+T + R +P+W N + + VYSFG+ +VC R +Q
Sbjct: 661 TTGIRGTRGYVAPEWFKNIAVTAKVDVYSFGVILLEIVCCRRNVEQ 706
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 327 FAREHRPISTIVTSQRQTSSPQWNVNFCLCVVILVYSFGL 446
F H IST+V P+++ F L V VYSFG+
Sbjct: 728 FNAAHTHISTVVAGTLGYLDPEYHATFQLTVKTDVYSFGI 767
>05_04_0114 + 18090593-18092248
Length = 551
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 145 AHLNIIIAFILREELAVAEQVDHGSGHDAVHVEDEVRLL---PGG 20
A N+ IA ++ E AV VD G G DA + VRL+ PGG
Sbjct: 187 AAANLSIAEVMEAERAVVHVVDLGGGVDANQWVELVRLVAARPGG 231
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 638 TALSKYRFLREFISIFLYFPWNLDYYS 558
T LS Y FLRE I +F Y + + YS
Sbjct: 1088 TGLSGYNFLREVIDLFGYVSYTKEPYS 1114
>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
Length = 202
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 505 VLQRFCCCHSLRAHTTRSRPRP 440
V RF CC + RA + SRP P
Sbjct: 25 VCARFVCCRARRADASASRPHP 46
>03_06_0569 +
34789286-34790052,34791216-34791512,34791604-34791835,
34792334-34792391,34792800-34792931,34793108-34793246,
34793460-34793622,34793693-34793734
Length = 609
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 187 GRTLLGPEEDEAASVPSSVGRHHLHVASELSDPVVFCVSN 306
G T + PEE EAA+ P +V R + A+++++ ++F S+
Sbjct: 192 GLTGMSPEEMEAAAEPHNVLRGKVLKAADVAEAMLFLASD 231
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 354 TIVTSQRQTSSPQWNVNFCLCVVILVYSFGLGRDRVVCAR 473
T + R +P+W N + + VYSFG+ ++C R
Sbjct: 669 TGIRGTRGYVAPEWFKNIAITAKVDVYSFGVILLEIICCR 708
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 116 DEGNNYIQMGSINALFVLGRTIGLVGHYLDQK---RMKQPL-YRHPWD 247
DEGN + G + L VLG V +YLD++ +++P +++P+D
Sbjct: 389 DEGNFTAEAGQFSGLSVLGAGNAAVVNYLDEQCSLILEEPYKHKYPYD 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,663
Number of Sequences: 37544
Number of extensions: 407828
Number of successful extensions: 1093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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