Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1401
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   1.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 402 LHSIAGLKSDAVTSQLYL*VDVLVQIIQHYFYV*NTKYNRV 280
           L +I     D+V  QLY  +D+LV+ +  + Y  N KY  V
Sbjct: 361 LGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGYESNVKYQVV 401


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 402 LHSIAGLKSDAVTSQLYL*VDVLVQIIQHYFYV*NTKYNRV 280
           L +I     D+V  QLY  +D+LV+ +  + Y  N KY  V
Sbjct: 361 LGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGYESNVKYQVV 401


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 705 MYLPDIILNTTKRFLRH 655
           +Y P I+   TK+F+RH
Sbjct: 6   VYRPTIVKKRTKKFIRH 22


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 250 HHLHVASELSDP 285
           HHLHVA +++ P
Sbjct: 342 HHLHVAKQMASP 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 142  GLNQRSVRPGSHDRSGRTLLGPEEDEAASV 231
            G NQ +V PG+ DRS R  L   E +  S+
Sbjct: 1865 GGNQGNVVPGNGDRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 142  GLNQRSVRPGSHDRSGRTLLGPEEDEAASV 231
            G NQ +V PG+ DRS R  L   E +  S+
Sbjct: 1861 GGNQGNVVPGNGDRSDRPELSEAECDIDSL 1890


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -2

Query: 689 LF*TQPR--DFFDTRGLVRTALSKYRFLREFISIF 591
           LF + P   DF+    +    L   RFL E IS F
Sbjct: 790 LFASMPNFADFYSEESINNQGLECLRFLNEVISDF 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,499
Number of Sequences: 438
Number of extensions: 4826
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)