Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1400
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    33   0.032
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   1.6  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   2.1  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   3.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.9  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   6.5  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   6.5  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   8.5  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 198 CRSRST*RCPYLNPTRSTLQ-WSNLSMYLFIRLSTKLLKN 314
           C   ST  CPYL PT   ++   NL ++L++RLS   + N
Sbjct: 404 CNPASTILCPYLFPTNVRMESLINLELFLYLRLSQNDIDN 443


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 182 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 268
           P PVAV   Q  +  I Q  P+HV+  +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 401 WAPLLFFRPQRHKAFRLHRALVFRPCTVLVFQQL 300
           W   + F  + HK  + H + V  PC++LV + L
Sbjct: 33  WPDYISFLTKLHKVLQTHSSFVNIPCSLLVSRAL 66


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 149 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 244
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 331 DRVRYWFFNNLVDNLINRYMDRLLHCNVDRVGLRY 227
           D+V YW   + V  L++R ++R+  C++  +  +Y
Sbjct: 24  DKVFYWSQIHKVRKLVDRSIERMESCSIINIITKY 58


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 176 PIPHPVAVSVPQYVKVPIPQPYPVHV 253
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 218 SRTAGPTQPPDGESELRSSSPRSHGTASCVTVCVWPSGSHSS 93
           S T+ P  P    S   +SSP    + SC T    P+G  SS
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSS 242


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 283 NRYMDRLLHCNVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLH 158
           N+Y  ++L   +    LR G +H L   H  ++      L+H
Sbjct: 201 NKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGRTLVH 242


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 251 RGPGRVEVWAPSRTAG 204
           +G GRVE+W  +RT G
Sbjct: 191 KGNGRVEIWFGARTPG 206


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 339 QCPMKSKSLMPLRSKKK*RCPSLSPMPCMYPCTNTSTTIR 458
           +C + +     L+   +  C  L PM C    T TSTT++
Sbjct: 660 KCTVPNIGSASLQGDARFACDVLRPMGCTVEQTATSTTVQ 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,584
Number of Sequences: 5004
Number of extensions: 42344
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)