Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1400
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 1.6
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 2.1
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 29 2.1
11_06_0679 - 26227654-26227770,26234067-26236217 29 2.8
07_03_0698 - 20765305-20768526 28 3.7
06_03_0454 - 20968052-20969758 28 3.7
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 28 3.7
01_06_1623 - 38716606-38717424 28 4.9
04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225 27 6.5
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 6.5
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 27 8.6
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 27 8.6
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 27 8.6
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 161 KKIGVPIPHPVAVSVPQYVKVPI--PQPYPVHVTVEQPI 271
K P P P AV +P+ V +P P P PV T P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPV 784
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 317 LVFQQLGGQPYKQVHG*VAPL*RGPGRVEVWAPSRTAGPTQ--PPDGE 180
L F QLG Q + VHG P+ G G W P+R +GPT+ P GE
Sbjct: 408 LSFHQLGTQSREMVHG-KPPV--GGG----WTPNRNSGPTRKAPSRGE 448
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 167 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 250
IG P+P+P +V VP V VPIP P+H
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMH 117
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -1
Query: 248 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVT-VC-VWPSGSHSSE 90
G GR W R G PD ++ P H T C + C + G HS+E
Sbjct: 589 GRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTE 643
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 409 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 284
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>06_03_0454 - 20968052-20969758
Length = 568
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 112 GHTHTVTHEAVPCDRGEEDRSSDSPSGGCVGPAVRE 219
GH V H+ V C G++D GG V PA E
Sbjct: 40 GHCRPVVHQ-VKCRGGDDDGGGGGRGGGVVMPAAGE 74
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +1
Query: 103 EPEGHTHTVTHEAVP-CDRGE--EDRSSDSPSGGCVGPAVREGAHTSTLPGPRYSGATYP 273
EP+ + H V + V DR +DR+S +P C A A + P P GA
Sbjct: 242 EPDHNVHLVFSDIVAWLDRRSHRQDRASITPPAACTDSAAAAAADSPVSPEPPRQGAAGG 301
Query: 274 CTC 282
C
Sbjct: 302 FLC 304
>01_06_1623 - 38716606-38717424
Length = 272
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 137 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 232
+PY V V++ IG PIP A +VP + +P+P
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVP 38
>04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225
Length = 289
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -2
Query: 139 LRVLLCACGLRAPILQKAERWRALLRE-GRL 50
LR L +CG+R+P ++ +R A+LR+ GR+
Sbjct: 46 LRELYYSCGIRSPNSEQIQRIAAMLRQYGRI 76
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 199 HSHRMGNRNSDLLHHGHMVRLR--VLLCACGLR 107
HSHR G R+ HH H R + VLL A R
Sbjct: 277 HSHRRGIRHKQQQHHQHPRRRKDTVLLAAAAAR 309
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 27.1 bits (57), Expect = 8.6
Identities = 28/97 (28%), Positives = 37/97 (38%)
Frame = -1
Query: 335 FRPCTVLVFQQLGGQPYKQVHG*VAPL*RGPGRVEVWAPSRTAGPTQPPDGESELRSSSP 156
FR T L +Q QP K +G V P +V V S A +P +E +SSSP
Sbjct: 387 FRKATNLSAEQ--DQPTKPANG-VLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSP 443
Query: 155 RSHGTASCVTVCVWPSGSHSSEGRALASATKRRTTVV 45
TA + P + KR+ T V
Sbjct: 444 VEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSV 480
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 294 STKLLKNQYRTRSKNQCPMKSKSLMPLRSKKK*RCPSLSPMPCMYPCTNTSTTIREVNT 470
++++LKN Y NQC S + P+R +K S S C ++S + ++++
Sbjct: 279 ASEILKNPYLQPYVNQCRPLSDAPTPIRMPEKPLSTSRSNQRCTSESQSSSISCSDIDS 337
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = -1
Query: 203 PTQPPDGES--------ELRSSSPRSHGTASCVTVCVWPSGSHSSEGR 84
P +PP ES + SS+ SHG++ V + SG H S GR
Sbjct: 578 PKRPPPSESHHGSSRSAKRTSSASSSHGSSGSVEERPYSSGRHGSSGR 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,612
Number of Sequences: 37544
Number of extensions: 335188
Number of successful extensions: 1415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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