Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1395
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0806 + 24788441-24789049                                         28   1.6  
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           27   2.9  

>06_03_0806 + 24788441-24789049
          Length = 202

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -3

Query: 149 ISIY--SLMYNLSGDVLSSLYKNLYLSRFIY*KIQINLVY 36
           ISIY  S++Y LS  +LS +Y ++YL   IY  I ++++Y
Sbjct: 164 ISIYLLSIIYYLSIYLLS-IYLSIYLLSIIYLSIYLSIIY 202


>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 143 IYSLMYNLSGDVLSSLYKNLYLSRFIY*KIQIN 45
           I+ ++Y   G VL  LY  LYL+  +  K+Q N
Sbjct: 748 IHFMVYGAGGAVLYRLYAYLYLNSLLAGKLQYN 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,774,617
Number of Sequences: 37544
Number of extensions: 81048
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)