Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1395
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    26   7.7  

>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 217 CK*SFVYFYLWIKLFLILRCVYKYLFIH*CII*VAMSFLPCIKIFIFLVLFI 62
           C    + F  WI L L+L   Y    +         S +P I IF+FL++F+
Sbjct: 62  CFYKIMKFTYWITLSLVLAMYYTVYQLD-----RPKSNIPLINIFVFLIIFL 108


>AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical
           protein Y76A2B.2 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 204 SYIFIYGSSYF*SFDVYINIYLFIN 130
           +++ I   S   SFDVYI IYLF++
Sbjct: 754 NHLPITSGSNITSFDVYIAIYLFVS 778


>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 190 LWIKLFLILRCVYKYL 143
           +W  +FL++ C+Y+Y+
Sbjct: 38  VWTAVFLLISCIYRYM 53


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 190 LWIKLFLILRCVYKYL 143
           +W  +FL++ C+Y+Y+
Sbjct: 38  VWTAVFLLISCIYRYM 53


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 164 SMCI*ISIYSLMYNLSGDVLSSLYKNLYLS 75
           S+C+  ++Y L+YN + +VL ++   LY S
Sbjct: 19  SLCLFSTMYILIYNFTTNVLKAMRYFLYAS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,769,067
Number of Sequences: 27780
Number of extensions: 95751
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)