Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1394
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...   156   2e-39
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    95   8e-21
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    57   2e-09
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    35   0.010
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.48 
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    28   1.1  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    27   1.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.4  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   5.9  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score =  156 bits (379), Expect = 2e-39
 Identities = 79/171 (46%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
 Frame = +3

Query: 48  VTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFS 227
           V KYK+AG++   V+++V+  C P A   +IC  GD+L+ E   KV++  KD+ KGIAF 
Sbjct: 22  VNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT-KDAYKGIAFP 80

Query: 228 TCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFIAVVAHTVXVGESEVSGR 401
           T VS N+   H SP+ S+P+    LK GD+ KI LGAHIDGF ++VA T  V E  V+G 
Sbjct: 81  TAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGP 140

Query: 402 AADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQ 554
           AADV               KPG  N+ VT+ + KI+  YGCKP+ GMLSHQ
Sbjct: 141 AADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQ 191


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
 Frame = +3

Query: 3   LTKKKSKKRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 182
           L    S  R+      +KY+ AG +V++   QV ++CVP AS REI  +GD L+ E  + 
Sbjct: 3   LDPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSS 62

Query: 183 VFKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDG 344
           ++K ++  +KGIA  T + VNNC  +++P        ++  Y L+ GD+ KI +G H DG
Sbjct: 63  IYKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDG 121

Query: 345 FIAVVAHTVXV 377
           + A+++HT+ V
Sbjct: 122 YTALISHTIVV 132


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +3

Query: 165 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 344
           +E T +   +E   K GI F T VS+N+C  H++P A +   ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206

Query: 345 FIAVVAHTV 371
            I   A T+
Sbjct: 207 RIVDSAFTM 215


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 225 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVXVGE 383
           S C SVN  ICH  P    P   L+ GD+  ID+  + +GF   +  T  VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 309  NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 220
            +L+ S+C  V+ QW+  ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
 Frame = -1

Query: 244 FTETHVENAMPFLESFSFLKTLLVSSNTSLSPNSHISLAD-----ASGTHFAMTCSRTRF 80
           F    V  A+ +L    F+   L   N  L  + HI L+D      S +  A T  + R 
Sbjct: 299 FYIAEVTAALEYLHLMGFIYRDLKPENILLHESGHIMLSDFDLSKQSNSAGAPTVIQARN 358

Query: 79  TICPANLYLVTTKSCCNRFFDFFFV 5
                N Y + TKSC   F    FV
Sbjct: 359 APSAQNAYALDTKSCIADFRTNSFV 383


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 24  KRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPD 122
           K+++Q+L V +   AG++++++ E    KC+P+
Sbjct: 23  KQIRQELAVAQ---AGELISKINENCFDKCIPE 52


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 112 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 207
           AF T +Q  Y N   NLY+   ++ S  R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 371 YCMSYNSYKSINVSTKIYLG*ISF 300
           YC    +YKS+ + T +Y+G   F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 161 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 57
           K + KF+   C  +++A C+D L  S H   C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 ASAREICEFGDKLVLEETNKVFKKEKD 203
           ++ +E   FG+KL  E T K+   EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,588
Number of Sequences: 5004
Number of extensions: 43536
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)