Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1394
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 95 3e-20
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 51 6e-07
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 48 4e-06
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 46 3e-05
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 42 3e-04
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 40 0.001
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 40 0.002
07_03_0808 - 21668100-21669092 28 6.0
01_06_0049 - 25953811-25954131,25954223-25954903 27 7.9
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 95.5 bits (227), Expect = 3e-20
Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 291 ILKKGD-LAKIDLGAHIDGFIAVVAHTVXVGESEVSGRAADVXXXXXXXXXXXXXXXKPG 467
I +KGD + D+G HIDGFIAVVAHT + + V+G+AADV +PG
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPG 110
Query: 468 TENYAVTEAIQKISAEYGCKPIEGMLSHQLKQF 566
+N VTEAIQK++A Y CK +EG+LSHQLKQF
Sbjct: 111 KKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQF 143
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 9 KKKSKKRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 173
+++ + L VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 8 REEKELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/121 (28%), Positives = 61/121 (50%)
Frame = +3
Query: 9 KKKSKKRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVF 188
+K+ +RLQ+ + + A ++ +V + + + P ++CE LE +
Sbjct: 228 EKRELERLQKPMY-NAVRRAAEVHRQVRKHMRSILKPGMLMIDLCE-----TLENMVRKL 281
Query: 189 KKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHT 368
KE + GIAF T S+N H++P + + +L+ D+ K+D G HIDG+I A T
Sbjct: 282 IKENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFT 340
Query: 369 V 371
V
Sbjct: 341 V 341
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 48.4 bits (110), Expect = 4e-06
Identities = 34/121 (28%), Positives = 60/121 (49%)
Frame = +3
Query: 9 KKKSKKRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVF 188
+K+ +RLQ+ + + A ++ +V + + + P ++CE LE +
Sbjct: 172 EKRELERLQKPMY-NAVRRAAEVHRQVRKYMRSILKPGMLMIDLCE-----TLENMVRKL 225
Query: 189 KKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHT 368
KE + GIAF T S+N H++P + +L+ D+ K+D G HI+G+I A T
Sbjct: 226 IKENGLEAGIAFPTGCSLNCVAAHWTPNGGDKT-VLQYDDVMKLDFGTHINGYIVDSAFT 284
Query: 369 V 371
V
Sbjct: 285 V 285
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +3
Query: 18 SKKRLQQDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKE 197
S+ ++ + + K A ++ RVLE P + EI + K++++
Sbjct: 133 SEIQMHDKVSIIHMKAACELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDAGAY---PS 189
Query: 198 KDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVXV 377
G S C SVN CICH P + E L+ GD+ ID+ +++G+ + T
Sbjct: 190 PLGYGGFPKSVCTSVNECICHGIPDSRE----LQDGDIINIDVTVYLNGYHGDTSKTFLC 245
Query: 378 GE-SEVSGRAADV 413
GE E S R V
Sbjct: 246 GEVDEASKRLVKV 258
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 213 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVXVGESEV 392
G S C SVN CICH P +L+ GD+ ID+ +++G+ + T GE +
Sbjct: 465 GFPKSVCTSVNECICHGIP----DSRVLQNGDIINIDVTVYLNGYHGDTSRTYLCGEVDE 520
Query: 393 S 395
S
Sbjct: 521 S 521
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/117 (25%), Positives = 47/117 (40%)
Frame = +3
Query: 213 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVXVGESEV 392
G S C SVN CICH P S P L+ GD+ ID+ +++G+ + T G V
Sbjct: 161 GFPKSVCTSVNECICHGIP-DSRP---LEDGDIINIDVTVYLNGYHGDTSATFLCG--NV 214
Query: 393 SGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQ 563
+A + PG E + IQ + ++ + + H + Q
Sbjct: 215 DDKAKKLVQVTRECLDKAISICAPGVEIKRIGRTIQDHADKFKFGVVRQFVGHGVGQ 271
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3
Query: 213 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVXVGESEV 392
G S C S+N C+CH P +++ L+ GD+ +D+ ++G+ + T GE +
Sbjct: 154 GFPKSICTSLNECVCHGVPDSTQ----LQTGDIMNVDVNVFLNGYHGGASRTFVCGEVDD 209
Query: 393 SGR 401
S R
Sbjct: 210 SIR 212
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 166 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 65
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 214 PFLESFSFLKTLLVSSNTSLSPNSHISLAD 125
PF SF F ++++ SLSP+S SL D
Sbjct: 45 PFSPSFGFSSPSPLATSVSLSPSSSASLVD 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,670
Number of Sequences: 37544
Number of extensions: 263324
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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