Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1391
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    29   3.6  
U49829-3|AAA93384.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 390 NFITLVILCVCVTNCLFLFNFIWCVCVICLVFNAF 494
           N  T +   + V +C  +F    C+CV+CLV  ++
Sbjct: 19  NATTEIWEVILVASCPIIFIVFLCLCVVCLVVRSY 53


>U49829-3|AAA93384.1|  724|Caenorhabditis elegans Hypothetical
           protein F27D9.5 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 493 NALNTRQITHTHQMKLNKNKQLVTHTQRMTNVIKLRSTV 377
           +ALN R++   +Q  LN+NKQ  TH    +   K  S++
Sbjct: 516 SALNARKLARANQF-LNQNKQRSTHVASFSKTYKFVSSL 553


>U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical
           protein K10C2.2 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 ITLVILCVCVTNCLFLFNFIWCVCV 470
           I LVILC+ +T  L +   IW  CV
Sbjct: 150 IVLVILCIIITTRLVVVLVIWTNCV 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,186
Number of Sequences: 27780
Number of extensions: 243339
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)