Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1391
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 388 SIL*RWSFSVCVSLIVCFYLISF 456
           S+L  WS  +C+SL+    LI F
Sbjct: 394 SVLIGWSAFLCISLVYIIMLIIF 416


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 185 ESNKSKTNVTRTDKGKGVSDRNGG 114
           + N  KT++  T +GKG     GG
Sbjct: 67  QCNDKKTDIEETGRGKGRGHGKGG 90


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 435 LFLFNFIWCVC 467
           LF+FNF++ VC
Sbjct: 12  LFIFNFVFAVC 22


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 453 IWCVCVICLVFNAFVI 500
           I C+ V+CL F +F++
Sbjct: 385 IQCLTVVCLAFWSFIV 400


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = -2

Query: 187  SNQINQRQT*HGQIKERGYRIGTAGXXXXXXXXXXNILVTNESTSER 47
            SN+I++ +    Q+  R Y +   G           ++  NE+ S +
Sbjct: 1880 SNEISEAECDRDQLVNRNYGVNARGKDGMTTEEMRKLIERNEAPSRQ 1926


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,848
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)