Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1388
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   4.9  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.5  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 249 RELNLVNDNNVCNYVET-**GHEYI*KIFLFLLLRW 145
           +EL+ +ND+++ NY++T   G EY+ K  L   +R+
Sbjct: 406 KELDSLNDHSLLNYIDTAFGGREYLKKTILTDFMRF 441


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 136 AHSPPGVKWLLGPIDIYNVNASPTLR 59
           A  PP +K    P+DI N++A+  L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 166 KNFLDIFMALLSFN 207
           KNFLD+F A+L+F+
Sbjct: 511 KNFLDLFQAVLTFH 524


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 319 VTTARLRVLLGRYCVTNCYFHETICSF--CLNI 411
           + TA + + L  YC+T  YF++ + ++  CL I
Sbjct: 448 IFTACVEIYLS-YCITQLYFYDPLTNYETCLEI 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,549
Number of Sequences: 5004
Number of extensions: 31228
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)