Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1387
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   231   2e-61
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   231   2e-61
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   143   9e-35
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   5e-07
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    30   1.0  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    29   3.1  
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880     28   4.1  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   7.1  
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239...    27   7.1  
01_01_0357 - 2816650-2817897                                           27   7.1  

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  231 bits (566), Expect = 2e-61
 Identities = 105/133 (78%), Positives = 118/133 (88%)
 Frame = -3

Query: 527 RKHVNHRREQRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 348
           RK   HRR QRWA K +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 347 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 168
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 167 LALYKEKKERPRS 129
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  231 bits (566), Expect = 2e-61
 Identities = 105/133 (78%), Positives = 118/133 (88%)
 Frame = -3

Query: 527 RKHVNHRREQRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 348
           RK   HRR QRWA K +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 181 RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 239

Query: 347 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 168
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 240 RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 299

Query: 167 LALYKEKKERPRS 129
           LAL+KEKKE+PRS
Sbjct: 300 LALFKEKKEKPRS 312



 Score =  228 bits (557), Expect = 2e-60
 Identities = 103/131 (78%), Positives = 116/131 (88%)
 Frame = -3

Query: 527 RKHVNHRREQRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 348
           RK   HRR QRWA K +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 69

Query: 347 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 168
           RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 70  RVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

Query: 167 LALYKEKKERP 135
           LAL+KEKKE+P
Sbjct: 130 LALFKEKKEKP 140


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  143 bits (346), Expect = 9e-35
 Identities = 64/94 (68%), Positives = 74/94 (78%)
 Frame = -3

Query: 527 RKHVNHRREQRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 348
           RK   HRR QRWA K +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC 
Sbjct: 82  RKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCA 140

Query: 347 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 246
           RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 141 RVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = -3

Query: 266 DEVLVAGFGRKGHAVGDIPGVRFKVVK 186
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +1

Query: 232 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 408
           P    P+T   S S+  F  P   T+A +  PF  + +            A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336

Query: 409 MPF 417
            PF
Sbjct: 337 SPF 339


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 217 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 327
           +PT  P  PNP  ST    SM F+ PS    A   FP
Sbjct: 3   TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38


>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
          Length = 898

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 235 LRPNPATSTSSFSSMWFRQPSRGT 306
           L P+ +T T +FS  WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 98  TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 247
           T GH+++  P+ L     LCR   E     + ++  P  E  E H+  DL   I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191


>02_01_0335 +
           2386902-2386906,2386976-2387282,2387664-2387777,
           2390252-2390320,2390416-2390715,2390829-2390930,
           2391085-2391279,2391377-2391664,2391942-2392128,
           2393168-2393272,2393778-2393824,2393982-2394074
          Length = 603

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 500 QRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 321
           ++W   E  K+   T++    F   +HA G+++   G+E    +++I         K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493

Query: 320 KVTAFVPR 297
           K  A+V R
Sbjct: 494 KYRAWVDR 501


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 304
           H+ ++  DR+PPLVLR   + G   R  G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,002
Number of Sequences: 37544
Number of extensions: 321395
Number of successful extensions: 877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)