Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1387
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   246   8e-66
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   6e-07
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    30   0.90 
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  246 bits (602), Expect = 8e-66
 Identities = 111/134 (82%), Positives = 123/134 (91%)
 Frame = -3

Query: 530 ARKHVNHRREQRWAHKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 351
           ARK   HR+EQRW  K +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKC
Sbjct: 10  ARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKC 69

Query: 350 VRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVS 171
           VRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN S
Sbjct: 70  VRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTS 129

Query: 170 LLALYKEKKERPRS 129
           L+AL+K KKERPRS
Sbjct: 130 LIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = -3

Query: 431 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 252
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 251 AGFGRK 234
            G GR+
Sbjct: 129 KG-GRR 133


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 25/98 (25%), Positives = 38/98 (38%)
 Frame = +3

Query: 213 NVTDGVTFTTESRH*YXXXXXXXXXATVTGDECGHFLSVLNELYTDAFADGRVGLLSFYT 392
           N+T  V F       Y           +TG   G +   LN  Y+ A+ D    L+ FYT
Sbjct: 150 NITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI--LMEFYT 207

Query: 393 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 506
            F    +  +R   E  +    T+   ++ F R  LF+
Sbjct: 208 KFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFS 241


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 193 TLKRTPGMSPTA*PLRPNPATSTSS 267
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 193 TLKRTPGMSPTA*PLRPNPATSTSS 267
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 314 TAFVPRDGCLNHIEEN 267
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,854
Number of Sequences: 27780
Number of extensions: 257651
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)