Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1386
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    30   0.14 
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   3.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   3.9  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   5.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   8.9  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 351 VLVRIYGNKTDLLIDRKAEVRNIKTLS 431
           +L+RIYG   +L I+R+ E+ N+K L+
Sbjct: 90  LLLRIYGPHVELFINRQVELENLKRLA 116


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 171 DIYIPIQIQESDIYGGINLLLKNLRPIWPLENV---KFKVFTDGITNKLV 311
           DIY P+++ E+   G ++++L  +  +  L  V   +F++  DG+  K++
Sbjct: 135 DIYWPVELFETLNIGDLSVILVKVYTLTSLNEVQVREFELNKDGVKKKIL 184


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 155 LPFSW*YLYSNSNSGKRYLWWDKPTSKKPKTYM 253
           +P+   +L     S +RY  WDK T   PK  +
Sbjct: 403 MPYDTIWLDIEYASKRRYFTWDKATFPNPKAML 435


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 327 TSHNENDIVLVRIYGNKTDLLI 392
           TSH +N ++L R+Y    +L I
Sbjct: 321 TSHPDNSLILQRLYSTNNELRI 342


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 330 SHNENDIVLVRIYGNKTDLLIDRKA 404
           SHN+ND++  ++    TD +  + A
Sbjct: 3   SHNQNDLLFTKLIDKLTDYMSSKDA 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,203
Number of Sequences: 5004
Number of extensions: 30831
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)