Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1386
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    36   0.019
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802...    34   0.043
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370...    32   0.23 
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    29   1.2  
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439...    29   1.2  
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518     27   6.6  

>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 351 VLVRIYGNKTDLLIDRKAEVRNIKTLSA 434
           V VR+YG  TDL+IDRK E++ I  LSA
Sbjct: 111 VTVRLYGPNTDLVIDRKRELQAIPHLSA 138


>05_06_0207 +
           26377836-26378201,26379785-26379906,26380025-26380220,
           26380642-26380759,26380869-26380916,26380995-26381095,
           26381178-26381285
          Length = 352

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 351 VLVRIYGNKTDLLIDRKAEVRNIKTLS 431
           VLVR+YG   +L  DR+AEVR  +++S
Sbjct: 72  VLVRVYGEGVELFFDREAEVRTFESMS 98


>01_06_0501 -
           29836545-29836640,29836752-29836855,29837034-29837081,
           29837188-29837305,29837812-29838007,29838089-29838210,
           29839409-29839831
          Length = 368

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 351 VLVRIYGNKTDLLIDRKAEVRNIKTLS 431
           VLVRIYG+  +L  DR+ EVR  + +S
Sbjct: 91  VLVRIYGDGVELFFDREDEVRTFECMS 117


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 194 SGKRYLWWDKPTSKKPK 244
           SGKR +WWD+ T ++P+
Sbjct: 275 SGKRRVWWDRKTQEEPQ 291


>01_01_0589 +
           4394154-4394513,4394641-4394762,4394862-4395057,
           4395275-4395392,4395499-4395546,4395691-4395791,
           4395893-4396000
          Length = 350

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 351 VLVRIYGNKTDLLIDRKAEVRNIKTLS 431
           VLVRIYG   ++  DR  EVR  + +S
Sbjct: 70  VLVRIYGQGVEVFFDRADEVRTFECMS 96


>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
          Length = 524

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 132 NFFNMSTVCLSAGDIYIPIQIQESDIYGGINLLLKNLRPIW 254
           NFF+ +T      D+ IP+ +  S + G +  L+ N +P W
Sbjct: 239 NFFHDNT------DVMIPLFLTTSHLAGEVQFLITNFKPWW 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,850
Number of Sequences: 37544
Number of extensions: 155299
Number of successful extensions: 342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)