Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1386
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase ... 48 3e-06
U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase ... 48 3e-06
U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase... 30 0.85
U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase... 30 0.85
Z98866-15|CAB11554.2| 335|Caenorhabditis elegans Hypothetical p... 29 1.1
AL132952-5|CAB61137.1| 498|Caenorhabditis elegans Hypothetical ... 29 2.0
AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical ... 27 4.5
AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical ... 27 4.5
Z98866-13|CAB11552.1| 327|Caenorhabditis elegans Hypothetical p... 27 6.0
>U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase c
protein 1, isoformb protein.
Length = 326
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +3
Query: 198 ESDIYGGINLLLKNLRPIWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 377
++D +L LRP W + F+ F+ GITNK+ T H V+ R++G+
Sbjct: 18 QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72
Query: 378 TDLLIDRKAEVRNIKTLS 431
T+ +IDR+ EV K L+
Sbjct: 73 TNKVIDRENEVIAWKQLA 90
>U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase c
protein 1, isoforma protein.
Length = 342
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +3
Query: 198 ESDIYGGINLLLKNLRPIWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 377
++D +L LRP W + F+ F+ GITNK+ T H V+ R++G+
Sbjct: 18 QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72
Query: 378 TDLLIDRKAEVRNIKTLS 431
T+ +IDR+ EV K L+
Sbjct: 73 TNKVIDRENEVIAWKQLA 90
>U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase a
protein 2, isoformb protein.
Length = 408
Score = 29.9 bits (64), Expect = 0.85
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +3
Query: 255 PLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 374
PLE+++ G++N L C+LS + NE + VL+R+Y N
Sbjct: 51 PLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 94
>U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase a
protein 2, isoforma protein.
Length = 429
Score = 29.9 bits (64), Expect = 0.85
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +3
Query: 255 PLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 374
PLE+++ G++N L C+LS + NE + VL+R+Y N
Sbjct: 72 PLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 115
>Z98866-15|CAB11554.2| 335|Caenorhabditis elegans Hypothetical
protein Y49E10.18 protein.
Length = 335
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 240 GFLEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 124
G L+ + KY++PE+EL H L G +++ +YV+
Sbjct: 178 GGLQQEIRRLKYQYPEYELWVTGHSLGGAIASIAASYVV 216
>AL132952-5|CAB61137.1| 498|Caenorhabditis elegans Hypothetical
protein Y51H4A.5 protein.
Length = 498
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 234 LEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 124
L+ + KY++P++EL H L G L++ +YV+
Sbjct: 347 LQQDIRQLKYKYPDYELWVTGHSLGGALASVAASYVV 383
>AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical
protein K03H6.2 protein.
Length = 348
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 240 GFLEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 124
G LE + + KYR+P++E+ H L L++ ++V+
Sbjct: 178 GGLEAEMRNLKYRYPDYEVWVTGHSLGAALASVGASWVV 216
>AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical
protein C39B5.5 protein.
Length = 442
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 234 LEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 124
L+ + KY++P++EL H L G +++ +YV+
Sbjct: 291 LQQDIRQLKYKYPDYELWVVGHSLGGAIASVAASYVV 327
>Z98866-13|CAB11552.1| 327|Caenorhabditis elegans Hypothetical
protein Y49E10.16 protein.
Length = 327
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -2
Query: 240 GFLEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 124
G L+ L KY++P++E+ H + G +++ +Y++
Sbjct: 172 GGLQQDLRKLKYQYPDYEIWVTGHSMGGAIASIAASYIV 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,604
Number of Sequences: 27780
Number of extensions: 160148
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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