Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1386
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   2.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   2.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 176 LYSNSNSGKRYLWWDK 223
           +Y + N  +++LWW K
Sbjct: 71  MYKDKNVVQKFLWWYK 86


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 176 LYSNSNSGKRYLWWDK 223
           +Y + N  +++LWW K
Sbjct: 71  MYKDKNVVQKFLWWYK 86


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 294 ITNKLVCCQLSTSHNENDIVLVRI 365
           +T ++  C L    NEND  L R+
Sbjct: 126 LTQRINSCDLLKKRNENDPFLKRL 149


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 294 ITNKLVCCQLSTSHNENDIVLVRIYGNKTDLLIDRKAEVRNIK 422
           +T ++  C L    NEND  L      K  +  D K  V NIK
Sbjct: 5   LTQRINSCDLLKKRNENDPFL------KRPITGDEKWVVNNIK 41


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 68  LVLFKLQLKLVCSLN 112
           L + KL LKL C++N
Sbjct: 152 LYMVKLTLKLSCAMN 166


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 285 TDGITNKLVCCQ 320
           TDG T K  CC+
Sbjct: 449 TDGETTKTFCCK 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,880
Number of Sequences: 438
Number of extensions: 2428
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)