Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1385
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.33 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    24   7.1  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   9.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    24   9.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   9.4  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   9.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 171 FFFLEHCFAFYIFLILSK*KRNSIPLYKGCFIHQNRLKDYFA 46
           FFF  HC  F+I + +     N +P +  CF     L  +F+
Sbjct: 82  FFFFSHCRRFHIAIFIHPYDSNVVPFF--CFFFYFSLFSFFS 121


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 278 PSKTSVSQNLPPDRNLDSLRRSGEKISG 195
           P+K  + QN+P + N D L +  E  SG
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSG 199


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 195 ALIVMNLIFFFLEHCFAFYIFLI 127
           AL+V++LIF+ L  CF    +++
Sbjct: 26  ALLVLSLIFYILYICFGTTSYIL 48


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 262 SRRIYHRIGISTH*EDPVRKSVGINC 185
           S R +H I    H E P+R ++  NC
Sbjct: 574 SVRFFHAIQSHFHLEGPIRYNMNSNC 599


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 246 TGSESRLTEKIR*ENQWALIVMNLIFFFLEHCFAFYIFL 130
           T SE R  +K+R +    +I    I +FL  C  F + L
Sbjct: 67  TSSELRRLQKLRLKMDLRIIPCLWILYFLSCCLRFTVSL 105


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 33  HDFVLRSSLSICFDG*NNLYIMESNFFS 116
           H F++   + +CFD   +  I  ++F S
Sbjct: 355 HSFIIYIQMQLCFDDLESYLIRRNHFLS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,510
Number of Sequences: 5004
Number of extensions: 26082
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)