Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1382
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 31 0.53
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 30 1.2
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 1.6
04_04_0722 - 27570215-27570388,27570492-27570561,27570765-27570886 29 2.8
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 29 2.8
02_01_0679 - 5048653-5051394 29 2.8
09_06_0322 - 22329897-22330078,22330569-22331928 28 4.9
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 28 4.9
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 27 6.5
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 6.5
05_01_0129 - 872127-872681,872762-873070,873180-873347 27 6.5
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 6.5
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 27 8.6
08_01_0842 - 8252232-8253155 27 8.6
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 27 8.6
05_05_0313 - 24026142-24026708 27 8.6
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 31.1 bits (67), Expect = 0.53
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 109 PATRPTSPAVLLDKKEVWSGAGSATSAAFKVKKGG---RYQ-MQVELCNSD-GCSSSEGV 273
P P P ++ V S + +A + A +KK +Y + V+L + GCS+ V
Sbjct: 141 PCQGPAMPVIIKADANVASTSNNAQTKAKDLKKSSDRSKYDHISVKLVMAGTGCSNIAAV 200
Query: 274 EIVVADTDGSHLRPLDYSIGEK 339
E V+ D DG ++Y + E+
Sbjct: 201 EQVLKDMDGDIDAAIEYMLAEQ 222
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 307 LRPLDYSIGEKN---KPFKQTSGKVVGAYFVEW--GVYPRKFPVDRVPVTNLTHLLYGFI 471
L PLD +G+ +P + G ++ +Y W G + F D + T H L GF+
Sbjct: 1350 LPPLDKCVGDVQGYLEPLEDDEG-ILESYAKSWTSGALDKAFQRDAMSFTVARHHLSGFV 1408
Query: 472 PICGGDG 492
C G G
Sbjct: 1409 FQCSGSG 1415
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 148 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 315
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 316 LDYSIGEKN 342
++ S E N
Sbjct: 677 VELSFAENN 685
>04_04_0722 - 27570215-27570388,27570492-27570561,27570765-27570886
Length = 121
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 57 LVTKKDAADVSVNWNVWTGDAADKSSSPAR*EGSLERCRQRHIGRFQSEEGRKIPD 224
L+ + A S WN+W A D +S P R L R +Q + R Q G K+PD
Sbjct: 15 LILVQTALVYSQAWNIW---AHDSASFPQR----LPR-KQIRLSRVQGNGGNKVPD 62
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 381 LLRRMGCVS*KVPCGPRSGYEPDSFALRLH 470
L+R +GC + VPC P SG E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 426 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 283
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 115 TRPTSPAVLLDKKEVWSGAG--SATSAAFKVKKGGRYQMQVELCNS 246
TR VLLDK ++GA +AT+A K ++G +++QV LC +
Sbjct: 24 TRRRPRWVLLDKLAYFAGADVRNATTATSKTREG--HEIQVTLCTA 67
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 328 IGEKNKPFKQTSGKVVGAYFVEWGVYPRKFPVDRVPV-TNLTHLLY 462
+G N+P + SGK V + Y +KF + PV ++L H L+
Sbjct: 1694 MGHANRPLQDDSGKCVILCYAPRKEYYKKFLFEAFPVESHLQHFLH 1739
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 368 KWWALTSSNGVCILESSLWTAFRLRT*LICSTASFRFVVVM 490
K W L GV I+E WT++R R L+ A F ++
Sbjct: 226 KIWRLLRPGGVFIMEPQPWTSYR-RNRLVSEVAKENFNTIL 265
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 54 QLVTKKDAADVSVNWNVWTGDAADKSSSPAR 146
+L TKK+ + +S+ W+ D++DK +S R
Sbjct: 1723 ELQTKKELSSLSLEWSYAYADSSDKYASSER 1753
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 364 GKVVGAYFVEWGVYPRKFPVDRVPV 438
G+ G + V WG+ R+ PV +PV
Sbjct: 78 GQAAGNFLVAWGLASRRLPVAPLPV 102
>03_05_0937 - 28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 492 AITTTNRNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSAHHFSRSL 355
A+ T NE EQM +V ++ HR+L++I + D+ S + S L
Sbjct: 922 ALKNTGLNE--EQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCL 965
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 434 GTRSTGNFLGYTPHSTK*APTTFPEVCLKG 345
GT S G+ YT H K P +CL+G
Sbjct: 1006 GTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>08_01_0842 - 8252232-8253155
Length = 307
Score = 27.1 bits (57), Expect = 8.6
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 296 SVSATTISTP-SLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFLSSRTAGLVG 120
+ SA+ S+P S L P Q + + L FT A VA + TSF SS TAG G
Sbjct: 107 AASASPSSSPVSPPLPPVTTQPAAAVKSLTLDFT-NPAKVAAASVTSTSFFSSVTAGGDG 165
Query: 119 RVA 111
V+
Sbjct: 166 SVS 168
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 115 TRPTSPAVLLDKKEVWSGAGSATSA 189
++P SP +KKE S AG+ATSA
Sbjct: 420 SQPESPKPTSEKKEAESEAGAATSA 444
>05_05_0313 - 24026142-24026708
Length = 188
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 256 SSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 366
+S EG +V + G H P Y G P +TSG
Sbjct: 61 TSEEGFRALVQELTGRHADPSKYRGGGGGAPVDETSG 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,670
Number of Sequences: 37544
Number of extensions: 282701
Number of successful extensions: 863
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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