Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1382
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   4.4  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   4.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   4.4  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily a...    27   7.7  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 106 GPATRPTSPAVLLDKKEVWSGAGSATSAAFKVKKGGRY 219
           G  T P +P    +  + +SGAG  ++AA     GG Y
Sbjct: 616 GGETAPAAPPPAPEPAQTYSGAGGESAAAAPAPSGGGY 653


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 106 GPATRPTSPAVLLDKKEVWSGAGSATSAAFKVKKGGRY 219
           G  T P +P    +  + +SGAG  ++AA     GG Y
Sbjct: 616 GGETAPAAPPPAPEPAQTYSGAGGESAAAAPAPSGGGY 653


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 477  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 358
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 477  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 358
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 477  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 358
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +3

Query: 21  VEVNQAATAYNQLVTKKDAADVSVNWNVW 107
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


>AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 304 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 3   ERTFAIVEVNQAATAYNQLVTKKDAADVSVNWNVWTGDAADKSSSPAR*EGSLERCRQRH 182
           ER     EVN A  A N  + K    D+      +TG +  +SSSP+R   ++    + H
Sbjct: 313 EREQTAKEVNSALLAMNGKL-KSSRLDLLAKTIAFTGCSQMRSSSPSRKHATIAEFSEEH 371

Query: 183 IGR 191
             +
Sbjct: 372 YSK 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,938
Number of Sequences: 27780
Number of extensions: 213783
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)