Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1381
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   4.3  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   4.3  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     24   9.9  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 313 LSIILLVRKISPXSRLREKWWALTFVEW 396
           L+I +LV  +SP  R RE W +  FV W
Sbjct: 120 LAIDVLVVFLSPILRHREGWRSNAFVLW 147


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 258 SSEGVEIVVADTDGSHLRPLDYSIGEKNKPXKQTSGKVVGAYFRRMG 398
           S E  +++V D++GS+    D   G  N     + G + G Y  R G
Sbjct: 113 SEEEEDLIVVDSNGSYAVTCDPIDGSSNIDAGVSVGTIFGIYKLRPG 159


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -2

Query: 462 VEQMSQVRNRNAVHRELSSIHTPFDESKRPPLFPKSAXRAYFSHQ*NN----REASNGYH 295
           V Q S+  +  A H   SS H P  +      + KS  +  F H+  N    +  +NG++
Sbjct: 236 VPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQRHNNGFY 295

Query: 294 Q 292
           +
Sbjct: 296 R 296


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 359 FGKSGGRLLSSNGVCILESSLWTAF 433
           FGK    LL +NGV ILE   W ++
Sbjct: 172 FGKISS-LLETNGVLILEPQGWDSY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,712
Number of Sequences: 5004
Number of extensions: 30282
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)