Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1381
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0246 - 6772369-6772808,6773223-6775788                           28   4.3  
05_05_0313 - 24026142-24026708                                         27   7.4  
05_05_0191 + 23127068-23127331,23127514-23127546                       27   9.8  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    27   9.8  
02_03_0099 + 15206282-15206917                                         27   9.8  
02_01_0757 - 5622522-5622783,5622803-5622924                           27   9.8  

>03_02_0246 - 6772369-6772808,6773223-6775788
          Length = 1001

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/68 (22%), Positives = 27/68 (39%)
 Frame = -3

Query: 449  VRFETGTRSTGNFLVYTPHSTKVSAHHFSRSLLXGLIFLTNRIIERPQMATISVSYYDFD 270
            VR  TG+   G   +  P  + V  H  +      ++ +  + +ERP M  +     D  
Sbjct: 899  VRMVTGSSKEGVTKIADPRLSTVPLHELTHVFYVAMLCVAEQSVERPTMREVVQILTDLP 958

Query: 269  ALARAASV 246
              A A ++
Sbjct: 959  GTAAATAM 966


>05_05_0313 - 24026142-24026708
          Length = 188

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 255 SSSEGVEIVVADTDGSHLRPLDYSIGEKNKPXKQTSG 365
           +S EG   +V +  G H  P  Y  G    P  +TSG
Sbjct: 61  TSEEGFRALVQELTGRHADPSKYRGGGGGAPVDETSG 97


>05_05_0191 + 23127068-23127331,23127514-23127546
          Length = 98

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 450 SQVRNRNAVHRELSSIHTPFDESKRPP 370
           S+   R  VHR+L  +H P   +  PP
Sbjct: 62  SEEEKRKRVHRKLEKLHRPTSPATTPP 88


>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +3

Query: 147 KKEVWSGAGSATSXAFKVKKGGRYQMQVELCN*DGCSSSE----GVEIVVADTDGSHLRP 314
           ++E+WSGA    S   K KK  +    ++    DG  S       VEIV+     + L  
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676

Query: 315 LDYSIGEKN 341
           ++ S  E N
Sbjct: 677 VELSFAENN 685


>02_03_0099 + 15206282-15206917
          Length = 211

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 129 SRVLLDKKEVWSGAGSATSXAFKV---KKGGRYQMQVELCN*DGCSSSEGVEIVVADTD 296
           +R++++  +  + A +ATS A      + GGRY + +   +    S++E  E+VV + D
Sbjct: 38  ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96


>02_01_0757 - 5622522-5622783,5622803-5622924
          Length = 127

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 307 KWLPSVSATTISTPSLELH 251
           KW+PS+S   I++P L+L+
Sbjct: 22  KWIPSLSRKPIASPELQLY 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,468
Number of Sequences: 37544
Number of extensions: 216406
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)